Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs12349278 | chr9:23523817 | A/T | 1.7E-7 | 101 | 8.6 | 16.58 | 14.2 | KM Plot |
| SKCM | rs12424908 | chr12:63402364 | G/A | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12425655 | chr12:63434463 | C/T | 1.13E-7 | 101 | 15.13 | 14.8 | 8.8 | KM Plot |
| SKCM | rs12425932 | chr12:63410497 | C/A | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12426017 | chr12:63396272 | T/G | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12426308 | chr12:63405778 | C/T | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12426860 | chr12:63387948 | C/T | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12426893 | chr12:63388120 | G/T | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs12518859 | chr5:587432 | C/T | 0 | 100 | 15.02 | 14.8 | 6.33 | KM Plot |
| SKCM | rs12519469 | chr5:581772 | A/G | 0 | 100 | 15.02 | 14.8 | 6.33 | KM Plot |
| SKCM | rs12519763 | chr5:559145 | C/T | 0 | 100 | 15.3 | 14.7 | 6.33 | KM Plot |
| SKCM | rs12521091 | chr5:590710 | G/T | 0 | 101 | 15.02 | 13.4 | 6.33 | KM Plot |
| SKCM | rs12521988 | chr5:556421 | C/T | 0 | 100 | 15.3 | 14.7 | 6.33 | KM Plot |
| SKCM | rs12522140 | chr5:587261 | C/A | 0 | 100 | 15.02 | 14.8 | 6.33 | KM Plot |
| SKCM | rs12522303 | chr5:555564 | A/C | 0 | 100 | 15.3 | 14.7 | 6.33 | KM Plot |